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Publications

Recent Publications

Yang, S., J. Fresnedo-Ramirez, Q. Sun, D.C. Manns, G.L. Sacks, A.K. Mansfield, J.J. Luby, J.P. Lando, B.I. Reisch, L.E. Cadle-Davidson, A. Y. Fennell. 2016.  Next generation mapping of enological traits in an F2 interspecific grapevine hybrid family.  PLoS ONE 11:e0149560. DOI:10.1371/journal.pone.0149560.

Fennell, A.Y., K.A. Schlauch, S. Gouthu, L.G. Deluc, V. Khadka, L. Sreekantan, J. Grimplet, G.R. Cramer and K. Mathiason. 2015. Short day transcriptomic programming during induction of dormancy in grapevine. Front. Plant Sci. http://dx.doi.org/10.3389/fpls.2015.00834.

Yang, S., J. Fresnedo-Ramirez, M. Wang, L. Cote, P. Schweitzer, P. Barba, E.M. Takacs, M. Clark, J. Luby, D.C. Manns, G. Sacks, A.K. Mansfield, J. Londo, A. Fennell, D. Gadoury, B. Reisch, L. Cadle-Davidson and Q. Sun. 2016. A next-generation marker genotyping platform (AmpSeq) in heterozygous crops: a case study for marker-assisted selection in grapevine. Horticulture Research 3. doi:10.1038/hortres.2016.2

George, I.S., A.Y. Fennell, P. Haynes. 2015. Protein identification and quantification from riverbank grape, Vitis riparia: Comparing SDS-PAGE and FASP-GPF techniques for shotgun proteomic analysis. Proteomics 15:3061-3065.  DOI:10.1002/pmic.201500085

Fennell, A. 2014.  Genomics and functional genomics of winter low temperature tolerance in temperate fruit crops.  Critical Reviews in Plant Sciences 33:125-140. doi:10.1080/07352689.2014.870410.

Cramer, G. R., Deluc, L. G., Spreeman, K., Schegg, K., Fennell, A. 2014, DIGE substantially reduces protein spot variability caused by 2-D PAGE and increases detection of differentially expressed proteins., Acta Horticulturae, 1046, 385-388.

Grimplet, J., J.L. Van Hemert, AP. Carbonell-Bejerano, J. Diaz-Riquelme, J. Dickerson, A. Fennell, M. Pezzotti, J.M. Martinez-Zapater. 2012. Comparative analysis of grapevine whole-genome gene predictions, functional categorization and integration of the predicted gene sequences.  BMC Research Notes 5:213 doi:10.1186/1756-0500-5-213.

He, D., K. Mathiason, A. Fennell. 2012.  Auxin and cytokinin related gene expression during active shoot growth and latent bud paradormancy in Vitis riparia grapevine. http://dx.doi.org/10.1016/j.jplph.2012.01.001

Victor, K.J., A. Fennell, J. Grimplet. 2010. Proteomic analysis of shoot tissue during photoperiod induced growth cessation in V. riparia Michx. grapegines. Proteome Science 8:44 doi:10.1186/1477-5956-8-44

Sreekantan, L., K. Mathiason, J. Grimplet, K. Schlauch, J. Dickerson, A. Fennell. 2010. Differential floral development and gene expression in grapevines during long and short photoperiods suggests a role for floral genes in dormancy transitioning. Plant Molecular Biology.

Grimplet, J., G. Cramer, J. Dickerson, J. Van Hemert, K. Mathiason, and A. Fennell. 2009. VitisNet: "Omics" Integration through Grapevine Molecular Networks. PLoS ONEhttp://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0008365

Terrell, B. and A. Fennell. 2009. Osha' (Bear root), Ligusticum porter var. porter, Coult. & Rose. Native Plant Journal 10:110–118.

Mathiason, K., D. He, J. Grimplet, J. Venkateswari, D.W. Galbraith, E. Or, and A. Fennell. 2009. Transcript profiling in Vitis riparia during chilling requirement fulfillment reveals coordination of gene expression patterns with optimized bud break. Funct Integr Genomics 9:81–96. doi:10.1007/s10142-008-0090-y

 

Data Sets

George I.S. Fennell A.Y. Haynes P.A. 2015. Protein identification and quantification from riverbank grape, Vitis riparia. PXD001399.

Grimplet, J. and A. Fennell. 2011. VitisNet 12x Molecular Networks.

Fennell, A. 2010. Short photoperiod induction of growth cessation in Vitis riparia grapevines. PRIDE Acession 16374. http://www.ebi.ac.uk/pride/

Fennell, A.  Photoperiod regulation of grape bud dormancy NCBI/GEO Accession GSE17502, GSE66913.

Cramer, G. Photoperiod regulation of bud dormancy VV10. PRIDE Accession#10470. http://www.ebi.ac.uk/pride/

Grimplet et al. 2009. Vitis vinifera 8x genome manual annotation. Vitisnet and http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.000836.

Mathiason, K. and A. Fennell. 2008. Chilling requirement fulfillment in Vitis riparia overwintering buds. NCBI/GEO Accession GSE9903.